What's new in PathVisio 3.1.3
Feb 18, 2015
- January 31 2014: Bug fix release
- GeneOntology terms are now removed from Search results for annotations
- DataNodes need to be annotated with ID and Datasource or nothing (saving data nodes with only ID or datasource is not allowed anymore)
New in PathVisio 3.1.2 (Nov 16, 2013)
- Major bug in file import module fixed: http://developers.pathvisio.org/ticket/1697
New in PathVisio 2.0.11 (Feb 25, 2011)
- Autosave
- Zoom using scroll wheel
- Selection of lines is easier: no longer necessary to click on the exact pixel
- Now with two methods for over-representation analysis; one pathway-oriented and one data-oriented
New in PathVisio 2.0.10 (Jan 27, 2011)
- New way of drawing rounded rectangles to avoid stretching effect
- Various small bugfixes
New in PathVisio 2.0.9 (Nov 21, 2010)
- New connector type for connector of arbitrary length and arbitrary angles
- New "cellular component" property for storing the biological meaning of a compartment
- New "double" line type (especially useful for double-membraned organelles)
- Clickable hyperlinks in pathways
- see milestone:"milestone_27" for a complete list of bug-fixes
New in PathVisio 2.0.8 (Aug 30, 2010)
- Improved shapes for cellular components
- A few usability improvements such as copy / paste in the popup menu
- see milestone:"milestone_26" for a complete list of bug-fixes
New in PathVisio 2.0.7 (Jul 31, 2010)
- toolbar icons and new side panel to make it easier to select arrow types and shapes (thanks liubing)
- Pathway databases are included as data source, so that you can add links from one pathway to another
- BioPAX converter has been improved and produces more valid BioPAX documents.
- new connector type where individual points can be manipulated (thanks leonth)
- Number of data sources has been increased to over 180
- see milestone:"milestone_25" for a complete list of bug-fixes
New in PathVisio 2.0.6 (Jun 18, 2010)
- The number of anchors on a shape can be increased from the default 12.
- A legend of the data visualization can now be shown on the pathway image itself. Previously it was only visible in a side panel.
- see milestone:"milestone_24" for a complete list of bug-fixes
New in PathVisio 2.0.4 (Mar 5, 2010)
- improved text formatting of shapes, labels and datanodes
- many more shapes for datanodes
- simple pixel coordinates
- set background color on datanodes
New in PathVisio 2.0.3 (Feb 5, 2010)
- Most notable in this release is the new XML Schema for the GPML pathway format (version 2010a). This new pathway format will enable many new graphical capabilities the future, you can look forward to some of those appearing in the next release.
- Other new features:
- Invisible anchors are really invisible, at least when something is connected to them (Thanks to Margot)
- Extra -v command line option (thanks to Mark)
- Currently selected database is displayed properly in the status bar again
- Many new extension points for plugin developers
- see milestone:"milestone_21" for a complete list of bug-fixes
New in PathVisio 2.0.1 (Dec 4, 2009)
- Improved algorithm for automatic connectors that point to an anchor.
- Improved drawing of arrow types that have a short "gap" at the end.
- Because the thawte freemail service has been cancelled, we updated our Security Certificate
- The Pathway History viewer had a bug where each line was considered modified, even if it wasn't. This has been fixed.