CaPSID Changelog

New in version 1.4.3

October 5th, 2012
  • Fixes Error message when running subtraction and alignment is not found
  • More work on fixing long running queries

New in version 1.4.2 (September 4th, 2012)

  • Removes MongoKit dependency

New in version 1.4.1 (July 5th, 2012)

  • Fixes cursor timeout for long running statistics queries

New in version 1.4.0 (June 4th, 2012)

  • Adds statistics while they are being run rather than all at the end
  • Saves unique id for genes as uid

New in version 1.2.7 (March 10th, 2012)

  • Fixes README

New in version 1.2.6 (February 7th, 2012)

  • Subtraction filters out unmapped when building mapped reads

New in version 1.2 (January 23rd, 2012)

  • Utility to create FastQ files from unmapped reads
  • Utility to return intersection of FastQ files
  • Utility to return filter FastQ files
  • Added mapq threshold flag to subtraction
  • Gbloader can now load bacteria and fungal genomes
  • Saves genome sequences to database using GridFS
  • Reduced memory footprint when calculating statistics
  • use subprocesses instead of os.system
  • mapq scores filter needs to include 0

New in version 1.1 (November 28th, 2011)

  • Adds support for pair-end reads

New in version 1.0.1 (October 20th, 2011)

  • Added support for MongoDB authentication