bint 0.1 Beta

Converts intensity text files to binary for fast subsetting

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LICENSE TYPE:
GPL v3 
USER RATING:
UNRATED
  0.0/5
DEVELOPED BY:
Nick Shrine
HOMEPAGE:
sourceforge.net
CATEGORY:
ROOT \ Utilities
3 bint Screenshots:
bint - Usage examplebint - Usage examplebint - Usage example
bint is a software was written for the purpose of obtaining subsets of intensity data from genotyping assays. Either the X & Y intensities for creating cluster plots or Log R Ratio and B Allele Frequencies for CNV detection.

Extracting the data for individual SNP/CNV markers or individual samples was slow grep/awk'ing the text files exported from the genotyping run (e.g. Illumina final report files).

bint converts the text representation of the intensity float data to into a IEEE754 indexed binary file for rapid extraction of subsets of the data. In theory bint could be used for any large tables of float data.

Last updated on April 30th, 2012

#text to binary #text file converter #fast subsetting #text #binary #converter #intensity

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