TreeStat 1.1

TreeStat is a software that can process a set of trees in a PHYLIP or NEXUS format tree file.

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LICENSE TYPE:
GPL (GNU General Public License) 
USER RATING:
3.1/5 16
DEVELOPED BY:
Andrew Rambaut
HOMEPAGE:
tree.bio.ed.ac.uk
CATEGORY:
ROOT \ Utilities
2 TreeStat Screenshots:
TreeStatTreeStat
TreeStat is a software that can process a set of trees in a NEXUS or PHYLIP format tree file and calculate a number of summary statistics for each. These are saved in a tab-delimited file for analysis in Tracer or statistics packages. A range of summary statistics are included:

Tree-Balance Statistics. Colless's, B1, N_bar, cherry count.
Tree shape.Tree height, node heights, treeness, Pybus' gamma.
Population genetic. Fu & Li's D, external/internal ratio.
Other.Tree length, root-to-tip lengths.

Requirements:

Java Runtime Environment (JRE) 1.5 or later

What's New in This Release:

New features:
A few new statistics

Bugs fixed:
Fixed incorrect calculation of Pybus's Gamma & Delta statistics Improvements to error handling

Last updated on May 7th, 2008

#NEXUS tree statistics #PHYLIP tree statistics #calculate summary statistics #NEXUS #PHYLIP #tree #statistics

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