TreeStat iconTreeStat 1.1

TreeStat is a software that can process a set of trees in a PHYLIP or NEXUS format tree file.
TreeStat is a software that can process a set of trees in a NEXUS or PHYLIP format tree file and calculate a number of summary statistics for each. These are saved in a tab-delimited file for analysis in Tracer or statistics packages. A range of summary statistics are included:

Tree-Balance Statistics. Colless's, B1, N_bar, cherry count.
Tree shape.Tree height, node heights, treeness, Pybus' gamma.
Population genetic. Fu & Li's D, external/internal ratio.
Other.Tree length, root-to-tip lengths.

Requirements:

Java Runtime Environment (JRE) 1.5 or later

What's New in This Release:

New features:
A few new statistics

Bugs fixed:
Fixed incorrect calculation of Pybus's Gamma & Delta statistics Improvements to error handling

last updated on:
May 7th, 2008, 14:55 GMT
price:
FREE!
developed by:
Andrew Rambaut
license type:
GPL (GNU General Public License) 
category:
ROOT \ Utilities

FREE!

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