Sheafer 1.0 Alpha 1

Sequence Clustering

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LICENSE TYPE:
GPL (GNU General Public License) 
USER RATING:
UNRATED
  0.0/5
DEVELOPED BY:
Alexey Stukalov
HOMEPAGE:
launchpad.net
CATEGORY:
ROOT \ Science
Sheafer is an utility to evaluate hierarchical clustering of protein sequences.

Sheafer is a C++ implementation of various methods of multiple sequence alignment (MSA) clustering and specificity residues prediction.

It currently implements:

1) clustering by Diversity-Ambiguity Optimization (DAO) (see DAO.pdf);
2) clustering by Contrast Entropy Optimization (CEO).
 
This program is built upon Boost C++ libraries, expat XML parser and EO Evolutionary Computation Framework.

Last updated on April 7th, 2009

#hierarchical clustering #protein sequences #sequence clustering #protein #sequence #clustering #hierarchical

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