UGENE iconUGENE 1.7.0

Integrated Bioinformatics Tools
UGENE is a free cross-platform genome analysis suite.

It works perfectly on Linux, Windows or Mac OS and requires only a few clicks to install.

Main features:

  • Main features:
  • Multiple sequence alignment using MUSCLE 3 and MUSCLE 4;
  • HMM profiles build and search, based on the source of HMMER 2 and HMMER 3;
  • PCR Primers design using Primer 3;
  • Protein secondary structure prediction using GOR IV and PSIPRED;
  • Search for restriction enzymes and integration with REBASE;
  • Extremely fast repeat finder;
  • Search for transcription factor binding sites using SITECON;
  • ORF finder;
  • Complete Smith-Waterman algorithm implementation.
  • User Interface:
  • Visual and interactive genome browsing;
  • Chromatograms visualization;
  • 3D viewer for files in PDB and MMDB formats;
  • Multiple sequence alignment editor;
  • Easy to use workflow designer for custom computational workflows.
  • High performance computing in UGENE
  • Complete support of modern multicore processors and SSE instructions;
  • Out of the box support of modern GPUs using NVIDIA CUDA and ATI Stream;
  • Integrated solutions for Cell Broadband Engine;
  • Private solutions for supercomputers and distributed computing.
  • Cooperation:
  • Can be used for education in schools and universities;
  • Features to be included into the next release are initiated by users;
  • UGENE team is ready for collaboration in related projects, both free or commercial.

last updated on:
June 1st, 2010, 11:00 GMT
price:
FREE!
developed by:
UniPro
license type:
GPL (GNU General Public License) 
category:
ROOT \ Science

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What's New in This Release:
  • The new release includes the long awaited DNA assembly functionality. Since now short read alignment can be performed with UGENE. Two methods are available:
  • Genome aligner plugin, based on unique algorithm;
  • Port of popular open-source tool Bowtie.
read full changelog

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