SVDetect 0.7m

A tool to detect genomic structural variations from paired-end and mate-pair sequencing data

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What's new in SVDetect 0.7m:

  • Change of the parameters location in the config file: read1_length, read2_length, mates_file, cmap_file located in the < general > block
  • The < compare > block is now completely independent
  • Addition of the list_read_lengths parameter in the < compare > block (in case of different libraries)
  • Modified configurations files in the test sample
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LICENSE TYPE:
GPL (GNU General Public License) 
USER RATING:
UNRATED
  0.0/5
DEVELOPED BY:
Bruno Zeitouni
HOMEPAGE:
svdetect.sourceforge.net
CATEGORY:
ROOT \ Science
SVDetect is a software for the isolation and the type prediction of intra- and inter-chromosomal rearrangements from paired-end/mate-pair sequencing data provided by the high-throughput sequencing technologies.

This tool aims to identifying structural variations with both clustering and sliding-window strategies, and helping in their visualization at the genome scale.

SVDetect is compatible with SOLiD and Illumina (>=1.3) reads.

Last updated on July 25th, 2011

requirements

#paired-end sequencing #mate-pair sequencing #structural variations #genomic #structural #variations #sequencing

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