Seq-Gen is a software that will simulate the evolution of nucleotide or amino acid sequences along a phylogeny.
Any number of trees may be read in and the program will produce any number of data sets for each tree. Thus large sets of replicate simulations can be easily created. It has been designed to be a general purpose simulator that incorporates most of the commonly used (and computationally tractable) models of molecular sequence evolution.
What's New in This Release:
· The PAM (Dayhoff) and Blosum matrices were interchanged so specifying one would result in the other being used instead.