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  • Home / Linux / Science and Engineering / Bioinformatics

    Jmol 11.8.3

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    Downloads: 4,684  Add to download basket  Tell us about an update
    User Rating:
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    Good (3.3/5)
    38 user(s)
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    Last Updated:

    Category:
    Egon Willighagen and Michael Howard | More programs
    LGPL / FREE
    September 7th, 2009, 22:45 GMT [view history]
    ROOT / Science and Engineering / Bioinformatics

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    Jmol description

     

    Jmol is a (bio)molecular viewer applet and application.

    Jmol is a free, open source molecule viewer for students, educators, and researchers in chemistry and biochemistry. Jmol is cross-platform, running on Linux/Unix, Mac OS X, and Windows systems.

    � The JmolApplet is a web browser applet that can be integrated into web pages.
    � The Jmol application is a standalone Java application that runs on the desktop.
    � The JmolViewer is a development tool kit that can be integrated into other Java applications.

    Jmol v10 is a complete rearchitecture and rewrite of Jmol, undertaken in the Spring of 2003, with the specific goal of developing Jmol into a replacement for the Chime Plug-in.

    Jmol v10 retains most of the features and functionality of the previous Jmol releases while offering significant enhancments in the following areas:

    � true 3D graphics engine that requires no special hardware
    � 24 bit color with accurate lighting and shading
    � substantially higher rendering performance
    � handles large macromolecules with excellent performance
    � protein/nucleic acid secondary structure graphics
    � RasMol/Chime script compatibility

    Here are some key features of "Jmol":

    · Free, open-source software licensed under the GNU Lesser General Public License
    · Applet, Application, and Systems Integration Component
    · Cross-platform
    · Supports all major web browsers
    · High-performance 3D rendering with no hardware requirements
    · File formats
    · Animations
    · Vibrations
    · basic unit-cell support
    · schematic shapes for secondary structures
    · measurements
    · RasMol/Chime scripting language support
    · JavaScript support library
    · Exports to .jpg, .pdf, and PovRay

    What's New in This Release: [ read full changelog ]

    · bug fix: undocumented/unoperational navigation ON/OFF removed
    · bug fix: spacegroup "-- [--]" displayed when load command option SPACEGROUP is used
    · bug fix: quaternionFrame default now "p"
    · bug fix: quaternion difference off by one group
    · bug fix: mol2 reader not properly allowing override of CRYSIN unit cell record
    · bug fix: draw picking in multimodel context causes null pointer exception
    · bug fix: WRITE MO does not work when no current MO is present

      


    TAGS:

    biomolecular viewer | molecular viewer | 3D rendering | Jmol | biomolecular | viewer



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