CaPSID is a comprehensive open source platform which integrates a high-performance computational pipeline for pathogen sequence identification and characterization in human genomes and transcriptomes together with a scalable results database and a user-friendly web-based software application for managing, querying and visualizing results.
You will need a MongoDB database, a Python 2.6+ installation and Apache Tomcat 6+. For more details, read the wiki:
What's New in This Release: [ read full changelog ]
· Fixes Error message when running subtraction and alignment is not found
· More work on fixing long running queries