Bio::Phylo 0.50

Bio::Phylo is a Perl module for the Bio::Phylo package for phylogenetic analysis using object-oriented perl5. In this file, methods are defined that are performed by other objects in the Bio::Phylo release that inherit from this base class (which you normally wouldn't use directly).

For general information on how to use Bio::Phylo, consult the manual (Bio::Phylo::Manual).

If you come here because you are trying to debug a problem you run into in using Bio::Phylo, you may be interested in the "exceptions" system as discussed in Bio::Phylo::Util::Exceptions. In addition, you may find the logging system in Bio::Phylo::Util::Logger of use to localize problems.

SYNOPSIS

 # Actually, you would almost never use this module directly. This is
 # the base class for other modules.
 use Bio::Phylo;
 
 # sets global verbosity to 'error'
 Bio::Phylo->VERBOSE( -level => Bio::Phylo::Util::Logger::ERROR );
 
 # sets verbosity for forest ojects to 'debug'
 Bio::Phylo->VERBOSE(
 -level => Bio::Phylo::Util::Logger::DEBUG,
 -class => 'Bio::Phylo::Forest'
 );
 
 # prints version, including SVN revision number
 print Bio::Phylo->VERSION;
 
 # prints suggested citation
 print Bio::Phylo->CITATION;


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Requirements:

· Perl