Bio::DB::GFF::Aggregator::ucsc_genscan 1.6.901

Bio::DB::GFF::Aggregator::ucsc_genscan is a UCSC genscan aggregator.

SYNOPSIS

use Bio::DB::GFF;

# Open the sequence database
my $db = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
-dsn => 'dbi:mysql:elegans42',
-aggregator => ['transcript','clone'],
);

-------------------------------------------------
Aggregator method: genscan
Main method: transcript
Sub methods: genscan
-------------------------------------------------

Bio::DB::GFF::Aggregator::transcript

method

Title : method
Usage : $aggregator->method
Function: return the method for the composite object
Returns : the string "genscan"
Args : none
Status : Public

part_names

Title : part_names
Usage : $aggregator->part_names
Function: return the methods for the sub-parts
Returns : empty list
Args : none
Status : Public

main_name

Title : main_name
Usage : $aggregator->main_name
Function: return the method for the main component
Returns : the string "transcript:genscan"
Args : none
Status : Public

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Requirements:

· Perl