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  • Home > Linux > Programming > Perl Modules

    Bio::ASN1::Sequence 1.10

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    Last Updated:

    Category:
    Dr. Mingyi Liu | More programs
    Perl Artistic License / FREE
    November 15th, 2007, 23:13 GMT
    ROOT / Programming / Perl Modules

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    Bio::ASN1::Sequence description

    A regular expression-based Perl Parser for ASN.1-formatted NCBI Sequences.

    Bio::ASN1::Sequence is a regular expression-based Perl Parser for ASN.1-formatted NCBI Sequences.

    SYNOPSIS

    use Bio::ASN1::Sequence;

    my $parser = Bio::ASN1::Sequence->new('file' => "downloaded.asn1");
    while(my $result = $parser->next_seq)
    {
    # extract data from $result, or Dumpvalue->new->dumpValue($result);
    }

    # a new way to get the $result data hash for a particular sequence id:
    use Bio::ASN1::Sequence::Indexer;
    my $inx = Bio::ASN1::Sequence::Indexer->new(-filename => 'seq.idx');
    my $seq = $inx->fetch_hash('AF093062');

    # for creation of .idx index files please refer to
    # Bio::ASN1::Sequence::Indexer perldoc


    Product's homepage

    Requirements:

    · Perl

      


    TAGS:

    Perl parser | NCBI Sequences | ASN1 parser | ASN1 | NCBI | sequence

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