ProDy is a Python module for Protein Structural Dynamics Analysis.
Using from the Share Drive
Choose this option if your machine has access to share drive always. You will have access to most up-to-date version of the code.
After you install at least the dependencies, add one of the following path to your PYTHONPATH system variable:
* Linux: /shared/Ahmet/newprody/source/
* Windows: S:\Ahmet\newprody\source\
Obtain one of the installation files from the share drive (S:\Ahmet\newprody\ or /shared/Ahmet/newprody/):
Grab prody-0.x.y.tar.gz from share drive. Extract tarball contents and run setup.py as follows:
tar -xzf pypdb-0.x.y.tar.gz
python setup.py install
You may need root access for the last step.
If you don’t have root access, you can edit PYTHONPATH system variable to recognize the path to this package.
e.g. move pypdb directory to a folder like /home/username/mypackages/ then add a line to your .bashrc (or alike) script as follows export PYTHONPATH=$PYTHONPATH:/home/username/mypackages/