- 42,013 downloads
A data mining workbench in Java.
- 8,629 downloads
An Open Source and free (bio)molecular viewer applet and application for Linux systems
- 8,397 downloads
A Perl extensions for bioinformatics.
- 4,311 downloads
A toolkit for the simulation of the passage of particles through matter.
- 4,080 downloads
Provides computational fluid dynamics analysis
- 3,723 downloads
Ghemical is a molecular modelling package with GUI and 3D-visualization tools.
- 2,387 downloads
A tool for simulation and modeling of biochemical networks.
- 1,885 downloads
Staden Package is a fully developed set of DNA sequence assembly, editing and analysis tools.
- 1,787 downloads
BALLView is an extensible viewer for bio-molecular structures.
- 1,697 downloads
A software environment enabling users to make a large number of advanced DNA sequence analyses.
- 1,657 downloads
CLC Sequence Viewer is a bioinformatics program for DNA, RNA, and protein sequence analysis
- 1,452 downloads
CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of ...
- 1,428 downloads
Processing high-throughput sequencing data with Python
- 1,258 downloads
Easily display, analyze and edit biological pathways with this cross-platform utility
- SecPod Saner
- 1,209 downloads
Constructs global multiple alignments of rearranged genome sequences
- 1,160 downloads
Bioinformatics Benchmark System is a bioinformatics benchmark system for platform performance meas...
- 1,129 downloads
An Open Source CLI software that lets you work with median networks and Steiner trees
- 1,110 downloads
Model Based Analysis for ChIP-Seq data
- 968 downloads
GDIS is a GTK based program for the display and manipulation of isolated molecules and periodic sy...
- 961 downloads
MacMolPlt is a modern graphics program for plotting 3-D molecular structures and normal modes (vib...
- 955 downloads
mpiBLAST is an MPI based parallel implementation of NCBI BLAST.
- 892 downloads
Needleman-Wunsch global sequence alignment in Python
- 875 downloads
Adun is an extensible biomolecular simulation program that includes data management and analysis c...
- 781 downloads
Python interface for the SAM/BAM sequence alignment and mapping format
- 712 downloads
RFLP planner is a tool that helps to plan a RFLP experiment.
- 691 downloads
pyNetConv is a Python library created to help the conversion of some network file formats.
- 665 downloads
NetAtlas is a Cytoscape plugin that uses tissue gene expression data to filter cellular signaling ...
- 592 downloads
LSim superposes macromolecular electron densities and computes a structural similarity score.
- 564 downloads
Python API for reading binary data files created with the Goby next-gen data management framework....
- 525 downloads
STochastic Engine for Pathway Simulation